[DEBUG-WINDOW 처리영역 보기]
BRIC을 시작페이지로 회원가입    로그인
BRIC동향
   
통합검색
배너1 배너2 스폰서배너광고 안내
오늘의 BRIC정보
바로가기 메뉴 설정하기
실험Q&A
채용정보
뉴스
모바일 BRIC RSS
트위터 페이스북
검색 뉴스레터 안내
IBC Journal
Bio일정
Bio일정
 
Bio일정 프리미엄(유료) 등록이란?
Bio마켓
Bio마켓
BioJob
BioJob
Biojob 프리미엄(유료) 등록이란?
BRIC에서 NDSL논문, 특허, 보고서를 검색하세요.
전체메뉴
대메뉴안내: 동향
뉴스 Bio통신원 Bio통계 BRIC View BRIC이만난사람들 웹진
BRIC View
최신자료 동향리포트 학회참관기 리뷰논문요약 BRIC리포트 외부보고서
[BBON] 생물정보학 뉴스레터 Vol 4/5, 2008
[BBON] 생물정보학 뉴스레터 Vol 4/5, 2008 저자
등록일 2009.03.06
조회4179  인쇄  주소복사  소셜네트워크로 공유하기
키워드: BBON, 생물정보학, Bioinformatics


 

Communication Recruit Resources Events Books and Reports Gossip

[Communication]


1. 2008년 4월 국내 연구논문 발표 실적
  2008년 4월 한달 동안 PubMed에 등록된 국내 생물정보학 관련 발표 논문(제1 저자를 기준으로 한국에서 발표한 논문을 대상으로 12가지의 생물정보학 관련 keyword로 검색하여 정리한 결과)


1) 발표 논문 전체: 26편

연구주체

대학

국가기관

병원

발표논문 수

23

2

1



2) 지역별분포

지역구분

서울/경기

대전

경북

부산

충북

발표논문 수

14

5

5

1

1



3) 주요 연구분야

분야

편수

분야

편수

Predictive Method

5

Functional Genomics

5

MicroArray

4

Proteome Analysis

3

Datamining

3

New Frontier

3

Phylogeny & Evolution

1

Database

1

Genome Annotation

1

 

 


2. 국외 뉴스
2008년 4월 주요 국외 뉴스 클리핑

날짜

내용

4월 29일 Scientists form International Cancer Genome Consortium
Scientists join together to form the International Cancer Genome Consortium, one of most ambitious biomedical research efforts since the Human Genome Project. The consortium will help to coordinate current and future large-scale projects to understand the genomic changes involved in cancer. This genomic information will accelerate efforts to develop better ways of diagnosing, treating and preventing many types of cancer.
4월 18일 Beijing Genomics Institute adds AB SOLiD system to its next generation sequencing technologies
The Beijing Genomics Institute announced today that BGI has added Applied Biosystems SOLiD System to BGI's rapidly expanding next-generation sequencing technologies.
4월 10일 Scientists develop strategy to rapidly describe outbreak strains with next-generation DNA sequencing
Following an outbreak or a bioterrorist attack, standard DNA sequencing and analysis of a pathogen genome for rapid identification of genetic changes or manipulations is time-intensive and likely impractical during an emergency. Researchers have now developed a comparative genomics strategy to drastically reduce the time needed to accurately identify unique genetic properties of a potential outbreak strain. This report, which demonstrates the approach using next-generation sequencing technology, is published online today in Genome Research (www.genome.org).
4월 2일 Researchers ID gene linked to lung cancer
Researchers at Johns Hopkins, as part of a large, multi-institutional study, have found one gene variant that is linked to an increased risk of lung cancer. The study will be published in the April 3 issue of Nature Genetics.


3. 국내외 전문연구동향 (산업동향 포함)

날짜

내용

4월 29일 질병정복의 꿈, '포스트 게놈'…아시아를 잡아라!
4월 28일 政, 유전정보 등 인체자원 직접 관리
4월 24일 보리와 밀에서 형광분석기를 이용한 멀티플렉스 레디 PCR방법 개발
4월 24일 EST 표지를 이용한 사과의 연관지도
4월 23일 옥수수의 연관지도 작성과 통기조직형성관련 QTL 확인
4월 17일 "'IT+BT+NT=첨단의료기'를 조기사업화 하라!"
4월 9일 신장과 유전 정보와의 관계 밝혀져
4월 1일 세계 최초로 흰개미 장내 공생 미생물의 게놈 해독
3월 31일 농업 해충인 바구미의 유전체 해독 완결


4. PubMed에 소개된 생물정보학관련 4월 주요리뷰(편집자 주)

저자

제목

Lagerstrom MC, Schioth HB. Structural diversity of G protein-coupled receptors and significance for drug discovery.
(Nat Rev Drug Discov. 2008 Apr;7(4):339-57)
Margulies EH, Birney E. Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes.
(Nat Rev Genet. 2008 Apr;9(4):303-13. Review.)
Gresham D, Dunham MJ, Botstein D. Comparing whole genomes using DNA microarrays.
(Nat Rev Genet. 2008 Apr;9(4):291-302.)
Kreek MJ. Role of a functional human gene polymorphism in stress responsivity and addictions.
(Clin Pharmacol Ther. 2008 Apr;83(4):615-8.)
Duffy S, Shackelton LA, Holmes EC. Rates of evolutionary change in viruses: patterns and determinants.
(Nat Rev Genet. 2008 Apr;9(4):267-76.)
Kruglyak L. The road to genome-wide association studies.
(Nat Rev Genet. 2008 Apr;9(4):314-8.)
Phoebe Chen YP, Chen F. Identifying targets for drug discovery using bioinformatics.
(Expert Opin Ther Targets. 2008 Apr;12(4):383-9.)
Rinn JL, Wang JK, Liu H, Montgomery K, van de Rijn M, Chang HY. A systems biology approach to anatomic diversity of skin.
(J Invest Dermatol. 2008 Apr;128(4):776-82)


5. PLoS Computational Biology Journals(편집자 주: Editor's Pick)
제목 요약
A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach Bjoern Peters et al. from La Jolla and California State provide an unbiased ranking of the performance of publicly available MHC class II prediction tools and highlight the binding core identification as a critical issue that limits the prediction performance.
PLoS Comput Biol 4(4): e1000048.
The Role of Elastic Stresses on Leaf Venation Morphogenesis Laguna, Bohn & Jagla explore the idea that elastic stresses play an important role in the development of leaf venation patterns. Through a comparison of actual and simulated patterns, their hypothesis explains the existence of hierarchical structures not accounted for by auxin canalization.
PLoS Comput Biol 4(4): e1000055.


6. Bioinformatics 저널 주요논문(편집자 주, IF, 인용지수=4.894)
Number Title
Bioinformatics
Volume 24, Number 7
The effect of sequence quality on sequence alignment
PCCA: a program for phylogenetic canonical correlation analysis
Statistical search on the Semantic Web
Bioinformatics
Volume 24, Number 8
The Taverna Interaction Service: enabling manual interaction in workflows
In silico Biochemical Reaction Network Analysis (IBRENA): a package for simulation and analysis of reaction networks

* Korean Scientist in Bioinformatics Journal (2008 / 4)

성 명

제 목

Yung-Keun Kwon and Kwang-Hyun Cho Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics ., Bioinformatics Advance Access published on February 19, 2008 Bioinformatics 2008 24: 987-994;
Jongsun Park, Jaejin Park, Suwang Jang, Seryun Kim, Sunghyung Kong, Jaeyoung Choi, Kyohun Ahn, Juhyeon Kim, Seungmin Lee, Sunggon Kim, Bongsoo Park, Kyongyong Jung, Soonok Kim, Seogchan Kang, and Yong-Hwan Lee FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors., Bioinformatics Advance Access published on February 26, 2008 Bioinformatics 2008 24: 1024-1025;
Bongshin Lee, Kristy Brown, Yetrib Hathout, and Jinwook Seo GOTreePlus: an interactive gene ontology browser., Bioinformatics Advance Access published on February 21, 2008., Bioinformatics 2008 24: 1026-1028;


7. BMC Journals
  7-1. BMC Bioinformatics (IF, 인용지수 = 3.62)

제 목

요 약

Integrating proteomic and microarray data
BMC Bioinformatics 2008, 9:118
Combining microarray and proteomics datasets at the level of individual exons and isoforms helps to obtain higher correlation between the datasets and to account for alternative splicing.
Scoring function for protein design 2008, 9:148 An extended coulomb/accessible surface area solvent model acts as an empirical scoring function for assessing protein stability and ligand binding affinities in protein structure prediction and computational protein design
Mind the GAPscreener
BMC Bioinformatics 2008, 9:205
PubMed abstracts can now be effectively screened for articles related to human genetic association studies and genome epidemiology using GAPscreener, a free java-based tool.

참고: BMC Bioinformatics: Most viewed articles in past 30 days
  7-2. BMC Genomics Research highlights (Impact Factor=4.03)

제 목

요 약

Resequencing genomes improves data quality
BMC Genomics 2008, 9:138
Errors in microbial genome sequences are not restricted to point mutations and may also consist of large-scale rearrangements, such as insertions, which should be rectified so that these data can be of continuing use.
SNP panel for rat genetics
BMC Genomics 2008, 9:95
A genomewide set of 820 SNP assays developed for a wide range of lab rat strains will ease genetic mapping studies and association studies in this important disease model.
Clever genomic tools for bird brains
BMC Genomics 2008, 9:131
The Songbird Neurogenomics initiative (SoNG) provides a genomic database, a set of genomic tools and also a mechanism for community collaboration to enhance research linking the genomics, evolution, neuroscience and behavior of songbirds.

참고: BMC Genomics: Most viewed articles in past 30 days

[Recruit]

주) BioJob에 등록된 구인 정보에 bioinformatics, genomics, proteomics를 검색해서 나오는 자료를 시간 순으로 정리 해서 사용 (마감날짜 기준 5월 15일 이후 자료임)

방식

형태

채용기관

학위

분야

마감일

계약직

PostDoc

한국생명공학연구원

Ph.D.

Bioinformatics
생물학관련모든분야

5/16

계약직

연구원

한국생명공학연구원

MS

Bioinformatics
생물학관련모든분야

5/16

계약직

경력사원

가톨릭대학교 의과대학

MS

Genomics
Cancer_Biology
Proteomics

5/19

정규직

연구원

(주)쓰리에스솔루션 기술연구소

전문대졸

Bioinformatics
Genomics
Proteomics

5/20

정규직

연구원

(주)진진바이오

MS

Bioinformatics
Genomics
Proteomics

5/22

계약직

PostDoc

국립수의과학검역원

Ph.D.

Veterinary_Medicine
Proteomics
Immunology

5/29

계약직

연구원

경희대학교

MS

Molecular_Biology
Bioinformatics
Genomics

5/31

계약직

PostDoc

한양대학교

Ph.D.

Molecular_Biology
Cell_Biology
Bioinformatics

5/31

계약직

PostDoc

화순전남대병원

Ph.D.

Genomics
Molecular_Biology

5/31



[Resources] 최근 주요 저널에 소개된 리소스

제목

관련URL

swissPIT: A novel approach for pipelined analysis of mass spectrometry data. http://swisspit.cscs.ch
M@IA: A Modular Open-Source Application for Microarray Workflow and Integrative Datamining. http://maia.genouest.org
NetAtlas: A Cytoscape Plugin to Examine Signaling Networks Based on Tissue Gene Expression http://sourceforge.net/projects/netatlas/
VariVis: a visualisation toolkit for variation databases. http://www.genomic.unimelb.edu.au/varivis
GAPscreener: An Automatic Tool for Screening Human Genetic Association Literature in PubMed Using the Support Vector Machine Technique http://www.hugenavigator.net/
HuGENavigator/HNDescription/...
The Vienna RNA Websuite. http://rna.tbi.univie.ac.at/
MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences http://www.megasoftware.net/
e-LiSe--an online tool for finding needles in the '(Medline) haystack'. http://miron.ibb.waw.pl/elise/
PedMine--a simulated annealing algorithm to identify maximally unrelated individuals in population isolates. http://www.hg.med.umich.edu/labs/
douglaslab/software.html
Using genetic markers to orient the edges in quantitative trait networks: the NEO software www.genetics.ucla.edu/labs/horvath/
aten/NEO
EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries http://www.sourceforge.net/projects/
estexpress
Fast Network Component Analysis (FastNCA) for gene regulatory network reconstruction from microarray data. http://www.eee.hku.hk/~cqchang/
FastNCA.htm
PubMedAlertMe-Standalone Windows-based PubMed SDI software application. http://amp.pharm.mssm.edu/PubMedAlertMe/
PubMed...
jModelTest: Phylogenetic Model Averaging http://darwin.uvigo.es
GeneTrack - a genomic data processing and visualization framework http://genetrack.googlecode.com
SubSeqer: a graph-based approach for the detection and identification of repetitive elements in low-complexity sequences. http://compsysbio.org/subseqer/
CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms. http://compbio.med.harvard.edu/CGHweb
GOTreePlus: an interactive gene ontology browser http://bioinformatics.cnmcresearch.org/
GOTreePlus/
PGMapper: a web-based tool linking phenotype to genes http://www.genediscovery.org/pgmapper/
index.jsp
BioLattice: a framework for the biological interpretation of microarray gene expression data using concept lattice analysis http://www.snubi.org/software/biolattice/
GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans http://www.eurocarbdb.org/applications/
ms-tools
KnotSeeker: heuristic pseudoknot detection in long RNA sequences http://www.csse.uwa.edu.au/~datta/
pseudoknot


[Events]

1. 2008년 국외 행사

행사명

기간

장소

BioMarker World Congress May 19-21, 2008 Philadelphia, PA, USA
Beyond Genome: Tools to Therapies June 08-11, 2008 The Fairmont Hotel, San Francisco
Mathematics and Informatics in Evolution and Phylogeny June 10-12, 2008 France: Hameau de l'Etoile
INTEGRATIVE STATISTICAL ANALYSIS OF GENOME SCALE DATA June 11-24, 2008 Cold Spring Harbor, NY

2. 국내 행사

행사명

날짜

장소

KHUPO 8th Annual International Proteomics Conference 2008/05/29~31 제주, 라마다호텔
바이오전자소자 이론 및 실습교육 2008/05/23~24 서강대학교 김대건관 101호
한국바이오칩학회 2008 춘계학술대회 2008/06/12~13 대전, 한국과학기술원(KAIST) 창의학습관


[Books and Reports]

사진

상세내용

Modeling and Control of Complex Systems (Control Engineering)
by Petros A. Ioannou (Editor), Andreas Pitsillides (Editor)
ISBN-10: 0849379857
Hardcover
544 pages
Optimization in Medicine and Biology (Engineering and Management Innovation)
by Gino J. Lim (Editor), Eva K. Lee (Editor)
ISBN-10: 0849305632
Hardcover
592 pages
Data Mining With Ontologies: Implementations, Findings and Frameworks (Premier Reference)
by Hector Oscar Nigro (Editor), Sandra Elizabeth Gonzalez Cisaro (Editor), Daniel Hugo Xodo (Editor)
ISBN-10: 1599046180
289 pages
Computational Intelligence in Medical Informatics
by Arpad Kelemen, Ajith Abraham, Yulan Liang
ISBN-10: 3540757678
380 pages

[Gossip]
싱가포르에서 개최되었던 RECOMB 2008 (National University of Singapore, 3월30일~4월 2일)에서 발표된 국내 연구자 및 발표 제목

Authors

Title

Hongseok Tae and Kiejung Park. ASMPKS: an analysis system for modular polyketide synthases
Hongseok Tae and Ki Jung Park. ConView: An easy and fast visualization tool for contig assembly
Kyungsook Kim, Mira Oh, Jangsun Baek and Young Sook Son. Missing Values Estimation for DNA Microarray Gene Expression Data: SPLS
Mira Oh, Kyungsook Kim and Young Sook Son. Neural network imputation for missing values in time-course gene expression data
SeungHeui Ryu, Hwan-Gue Cho, DoHoon Lee COCAW:Comparative Observer for Conserved Areas
Sang Yup Lee, Jin Hwan Park, Kwang Ho Lee and Tae Yong Kim. L-valine production by systematically engineered Escherichia coli
Sang Yup Lee and Tae Yong Kim. Deciphering the evolution and metabolism of Mannheimia succiniciproducens MBEL55E by genome-scale analysis
Tae Yong Kim, Soo Yun Moon, Soon Ho Hong and Sang Yup Lee. Metabolic engineering of Escherichia coli for the production of malic acid
Tae Yong Kim, Hyung Rok Choi and Sang Yup Lee. Metabolic pathway analysis and its optimization for producing succinic acid in Mannheimia succiniciproducens MBEL55E
Sang Yup Lee, Kwang Ho Lee, Jin Hwan Park and Tae Yong Kim. Metabolic engineering of Escherichia coli for L-threonine production based on systems biology
Tae Yong Kim, Hyun Uk Kim, Joon Haeng Rhee and Sang Yup Lee. Application of genome-scale metabolic model of Vibrio vulnificus CMCP6 for in silico drug targeting
Jong Myoung Park, Hongseok Yun and Sang Yup Lee. MFAML: Metabolic Flux Analysis Markup Language
Jong Myoung Park, Hongseok Yun, Jeong Wook Lee, Joonwoo Jeong, Jaesung Chung and Sang Yup Lee. EcoProDB: The protein database for Escherichia coli
Jong Myoung Park, Choamun Yun, Hongseok Yun, Sunwon Park and Sang Yup Lee. Development of an integrative online tool for modeling and simulation of cellular networks
저작자 표시 필수 상업적 이용 불가 컨텐츠 변경 불가
 
목록
Beckman Coulter
Beckman Coulter 스폰서배너광고 안내
 
이전페이지로 돌아가기 맨위로 가기
 

BRIC 홈    BRIC 소개    회원    검색    문의/FAQ    광고
Copyright © BRIC. All rights reserved. Contact member@bric.postech.ac.kr

 

 

 .